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How can I create a "VAT Only" invoice?

I didn't get my VAT registration bumber until a couple of months after my company formed. I had already invoiced the client, but without adding VAT.

As I was actually VAT Registered, when the certificate finally arrived, I had to invoice the client for the VAT that should have been charged, and did so with a VAT Only invoice.

I am now adding all this info into FreeAgent - how can I specify that an invoice only contains VAT dating back to cover the last couple of months?
 
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